CLUSTAL 2.0.12 multiple sequence alignment EF424621_AntelopeCoV_US/OH1/20 ATGTCGAAGATCAACAAATACGGTCTCGAACTACACTGGGCTCCAGAATT 50 EF424622_GiCoV_US/OH3-TC/2006_ ATGTCGAAGATCAACAAATACGGTCTCGAACTACACTGGGCTCCAGAATT 50 NC_003045_BCoV_BCoV-ENT_nsp1_2 ATGTCGAAGATCAACAAATACGGTCTCGAACTACACTGGGCTCCAGAATT 50 NC_007732_PHEV_VW572_nsp1_211. ATGTCGAAGATCAACAAATACGGTCTCGAACTATACTGGGCTCCAGAATT 50 NC_005147_HCoV-OC43_OC43_nsp1_ ATGTCGAAGATCAACAAATACGGTCTCGAACTACACTGGGCTCCAGAATT 50 AY884001_CoV-HKU1B_N2_nsp1_200 ATGATTAAAACCAGCAAATACGGTCTCGGCTTCAAGTGGGCGCCAGAATT 50 DQ339101_CoV-HKU1C_N5_nsp1_200 ATGATTAAAACCAGCAAATACGGTCTCGGCTTCAAGTGGGCGCCAGAATT 50 NC_006577_CoV-HKU1A_N1_nsp1_20 ATGATTAAAACCAGCAAATACGGTCTCGGCTTCAAGTGGGCGCCAGAATT 50 NC_001846_MHV_MHV-A59_nsp1_210 ATGGCAAAGATGGGCAAATACGGTCTCGGCTTCAAATGGGCCCCAGAATT 50 NC_005831_HCoV-NL63_AmsterdamI -------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ -------------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 -------------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. -------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 -------------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ -------------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. -------------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 -------------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 -------------------------------------------------- AY545919_SARS-badger_CFB/SZ/94 -------------------------------------------------- AY304488_SARS-civet_SZ16_nsp1_ -------------------------------------------------- NC_009694_SARS-bat_HKU3-1_nsp1 -------------------------------------------------- NC_009019_Bat-CoV-HKU4_B04f -------------------------------------------------- NC_009020_Bat-CoV-HKU5_LMH3f -------------------------------------------------- NC_009021_Bat-CoV-HKU9_BF_005I -------------------------------------------------- EF424621_AntelopeCoV_US/OH1/20 TCCATGGATGTTTGAGGACGCAGAGGAGAAGTTGGACAACCCTAGTAGTT 100 EF424622_GiCoV_US/OH3-TC/2006_ TCCATGGATGTTTGAGGACGCAGAGGAGAAGTTGGACAACCCTAGTAGTT 100 NC_003045_BCoV_BCoV-ENT_nsp1_2 TCCATGGATGTTTGAGGACGCAGAGGAGAAGTTGGACAACCCTAGTAGTT 100 NC_007732_PHEV_VW572_nsp1_211. TCCATGGATGTTTGAGGACGCAGAGGAGAAGTTGGATAACCCTAGTAGTT 100 NC_005147_HCoV-OC43_OC43_nsp1_ TCCATGGATGTTTGAGGACGCAGAGGAGAAGTTGGATAACCCTAGTAGTT 100 AY884001_CoV-HKU1B_N2_nsp1_200 TCGTTGGCTGCTTCCGGATGCAGCGGAGGAGTTGGCTAGTCCTATGAAGT 100 DQ339101_CoV-HKU1C_N5_nsp1_200 TCGTTGGCTGCTTCCGGATGCAGCGGAGGAGTTGGCTAGTCCTATGAAGT 100 NC_006577_CoV-HKU1A_N1_nsp1_20 TCGTTGGCTGCTTCCGGATGCAGCGGAGGAGTTGGCTAGTCCTATGAAGT 100 NC_001846_MHV_MHV-A59_nsp1_210 TCCATGGATGCTTCCGAACGCATCGGAGAAGTTGGGTAACCCTGAGAGGT 100 NC_005831_HCoV-NL63_AmsterdamI -------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ -------------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 -------------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. -------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 -------------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ -------------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. -------------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 -------------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 -------------------------------------------------- AY545919_SARS-badger_CFB/SZ/94 -------------------------------------------------- AY304488_SARS-civet_SZ16_nsp1_ -------------------------------------------------- NC_009694_SARS-bat_HKU3-1_nsp1 -------------------------------------------------- NC_009019_Bat-CoV-HKU4_B04f -------ATGCTTTCCAAGGCTAGTGTGACCACGCAAGGTGCGCGTGGTA 43 NC_009020_Bat-CoV-HKU5_LMH3f -------ATGTCTTTCGTGGCTGGTGTGGCTCCTCAAGGTGCGAGGGGCA 43 NC_009021_Bat-CoV-HKU9_BF_005I -------------------------------------------------- EF424621_AntelopeCoV_US/OH1/20 CAGAGGTGGATATAGTATGCTCCACCACTGCGCAAAAGCTGGAAACAGGC 150 EF424622_GiCoV_US/OH3-TC/2006_ CAGAGGTGGATATAGTATGCTCCACCACTGCGCAAAAGCTGGAAACAGGC 150 NC_003045_BCoV_BCoV-ENT_nsp1_2 CAGAGGTGGATATAGTATGCTCCACCACTGCGCAAAAGCTGGAAACAGGC 150 NC_007732_PHEV_VW572_nsp1_211. CAGAGGTGGATATAGTTTGCTCCACCACTGCGCAAAAGCTGGAAACAGGC 150 NC_005147_HCoV-OC43_OC43_nsp1_ CAGAGGTGGATATGATTTGCTCCACCACTGCGCAAAAGCTGGAAACAGAC 150 AY884001_CoV-HKU1B_N2_nsp1_200 CAGATGAGGGTGGGTTATGCCCCTCTACTGGTCAAGCGATGGAAAGTGTT 150 DQ339101_CoV-HKU1C_N5_nsp1_200 CAGATGAGGGTGGGTTATGCCCCTCTACTGGTCAAGCGATGGAAAGTGTT 150 NC_006577_CoV-HKU1A_N1_nsp1_20 CAGATGAGGGTGGGTTATGCCCCTCTACTGGTCAAGCGATGGAAAGTGTT 150 NC_001846_MHV_MHV-A59_nsp1_210 CAGAGGAGGATGGGTTTTGCCCCTCTGCTGCGCAAGAACCGAAAGTTAAA 150 NC_005831_HCoV-NL63_AmsterdamI -------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ -------------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 -------------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. -------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 -------------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ -------------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. -------------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 -------------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 -ATGGAGAGCCTTGTTCT-TGGTGTCAACGAGAAAACACACGTCCAACTC 48 AY545919_SARS-badger_CFB/SZ/94 -ATGGAGAGCCTTGTTCT-TGGTGTCAACGAGAAAACACACGTCCAACTC 48 AY304488_SARS-civet_SZ16_nsp1_ -ATGGAGAGCCTTGTTCT-TGGTGTCAACGAGAAAACACACGTCCAACTC 48 NC_009694_SARS-bat_HKU3-1_nsp1 -ATGGAGAGCCTTGTTCT-TGGTGTCAATGAGAAAACACACGTCCAACTC 48 NC_009019_Bat-CoV-HKU4_B04f AGTATCGAGCAGAGCTCTATAATGAAAAAAGAAGTGACCATGTTGCTTGC 93 NC_009020_Bat-CoV-HKU5_LMH3f AGTATAGAGCAGAGCTCAACACTGAAAAAAGGACTGACCATGTGTCTCTC 93 NC_009021_Bat-CoV-HKU9_BF_005I --------------------------------ATGGAGGGTGTGCCTGAC 18 EF424621_AntelopeCoV_US/OH1/20 GGAATTTGTCCTGAAAATCATGTGATGGTGGATTGTCGCCGACTTCTTAA 200 EF424622_GiCoV_US/OH3-TC/2006_ GGAATTTGTCCTGAAAATCATGTGATGGTGGATTGTCGCCGACTTCTTAA 200 NC_003045_BCoV_BCoV-ENT_nsp1_2 GGAATTTGTCCTGAAAATCATGTGATGGTGGATTGTCGCCGACTTCTTAA 200 NC_007732_PHEV_VW572_nsp1_211. GGAATTTGTCCTGAAAATCATGTGATGGTGGATTGTCGCCGACTTCTTAA 200 NC_005147_HCoV-OC43_OC43_nsp1_ GGAATTTGTCCTGAAAATCATGTGATGGTGGATTGTCGCCGACTTCTTAA 200 AY884001_CoV-HKU1B_N2_nsp1_200 GGATTTGTTTATGATAATCATGTGAAGATAGATTGTCGCTGCATTCTTGG 200 DQ339101_CoV-HKU1C_N5_nsp1_200 GGATTTGTTTATGATAATCATGTGAAGATAGATTGTCGCTGCATTCTTGG 200 NC_006577_CoV-HKU1A_N1_nsp1_20 GGATTCGTTTATGATAATCATGTGAAGATAGATTGTCGCTGCATTCTTGG 200 NC_001846_MHV_MHV-A59_nsp1_210 GGAAAAACTTTGGTTAATCACGTGAGGGTGAATTGTAGCCGGCTTCCAGC 200 NC_005831_HCoV-NL63_AmsterdamI ---------------------------ATGTTTTACAATCAAGTGACACT 23 EF203064_Bat-CoV-HKU2_HKU2/GD/ ---------------------------ATGTCTATCAACCAATTGACACT 23 NC_002645_HCoV-229E_inf-1_nsp1 ---------------------------ATGGCCTGCAACCGTGTGACACT 23 NC_003436_PEDV_CV777_nsp1_297. ---------------------------ATGGCTAGCAACCATGTCACATT 23 NC_009657_BtCoV-G1_BtCoV/512/2 ---------------------------ATGGCAAGCAACCATATTTCGTT 23 NC_002306_TGEV_PUR46-MAD_nsp1_ ---------------------------ATGAGTTCCAAACAATTCAAGAT 23 DQ811787_PRCV_ISU-1_nsp1_304.. ---------------------------ATGAGTTCCAAACAATTCAAGAT 23 AY994055_FIPV_79-1146_nsp1_311 ---------------------------ATGAGTTCCAAACAATTTAAGAT 23 NC_004718_SARS-human_Tor2_nsp1 AGTTTGCCTGTCCTTCAGGTTAGAGACGTG-CTAGTGCG-TGGCTTCGGG 96 AY545919_SARS-badger_CFB/SZ/94 AGTTTGCCTGTCCTTCAGGTTAGAGACGTG-CTAGTGCG-TGGCTTCGGG 96 AY304488_SARS-civet_SZ16_nsp1_ AGTTTGCCTGTCCTTCAGGTTAGAGACGTG-CTAGTGCG-TGGCTTCGGG 96 NC_009694_SARS-bat_HKU3-1_nsp1 AGTTTGCCTGTTCTTCAGGTTAGAGACGTG-CTAGTGCG-TGGCTTCGGG 96 NC_009019_Bat-CoV-HKU4_B04f ACAGTACCACTTTGTGATACTGATGACATGGCTTGTAAGCTCACACCATG 143 NC_009020_Bat-CoV-HKU5_LMH3f AAAGCGTCACTCTGTGATGCAGGAGATCTGGTTCTCAAGATCTCACCATG 143 NC_009021_Bat-CoV-HKU9_BF_005I CCACCTAAGCTTAAAAGTATGGTGGTTACCACTTTGAAGTGGTGCGATCC 68 EF424621_AntelopeCoV_US/OH1/20 ACAAGAATGTTGTGTGCAGTCTAGCCTAATACGTGAAATTGTTATGAATA 250 EF424622_GiCoV_US/OH3-TC/2006_ ACAAGAATGTTGTGTGCAGTCTAGCCTAATACGTGAAATTGTTATGAATA 250 NC_003045_BCoV_BCoV-ENT_nsp1_2 ACAAGAATGTTGTGTGCAGTCTAGCCTAATACGTGAAATTGTTATGAATA 250 NC_007732_PHEV_VW572_nsp1_211. ACAAGAGTGTTGTGTGCAGTCTAGCCTAATACGTGAAATTGTTATGAATA 250 NC_005147_HCoV-OC43_OC43_nsp1_ ACAAGAGTGTTGTGTGCAGTCTAGCCTAATACGTGAAATTGTTATGAATG 250 AY884001_CoV-HKU1B_N2_nsp1_200 ACAAGAATGGCATGTGCAGTCAAATCTTATCCGTGATATTTTTGTTCATG 250 DQ339101_CoV-HKU1C_N5_nsp1_200 ACAAGAATGGCATGTGCAGTCAAATCTTATCCGTGATATTTTTGTTCATG 250 NC_006577_CoV-HKU1A_N1_nsp1_20 ACAAGAATGGCATGTGCAGTCAAATCTTATCCGTGATATTTTTGTTCATG 250 NC_001846_MHV_MHV-A59_nsp1_210 TTTGGAATGCTGTGTTCAGTCTGCCATAATCCGTGATATTTTTGTAGATG 250 NC_005831_HCoV-NL63_AmsterdamI TGCTGT------TGCAAGTGATTCGGAAATTTCAGGTTTTGGTTTTGCCA 67 EF203064_Bat-CoV-HKU2_HKU2/GD/ TGCAGT------TGCAAGTGACCAGGAAATTTCAGCTCATGGCTATCCTA 67 NC_002645_HCoV-229E_inf-1_nsp1 TGCCGT------AGCAAGTGATTCTGAAATTTCTGCAAATGGCTGTTCTA 67 NC_003436_PEDV_CV777_nsp1_297. GGCGTT------TGCCAATGATGCAGAAATTTCGGCTTTTGGCTTTTGCA 67 NC_009657_BtCoV-G1_BtCoV/512/2 GGCTTT------TGCCAATGATGAAGAAATTTCAGCAATTGGCTTTGGCT 67 NC_002306_TGEV_PUR46-MAD_nsp1_ CCTTGT------TAATGAGGACTATCAAGTCAACGTGCCTAGTCTTCCTA 67 DQ811787_PRCV_ISU-1_nsp1_304.. CCTCGT------CAATGAGGACTACCAAGTCAACGTGCCTAGTCTTCCTA 67 AY994055_FIPV_79-1146_nsp1_311 CCTCGT------TAATGAGGACTACCAAGTCAACGTTCCTAGCCTTCCTT 67 NC_004718_SARS-human_Tor2_nsp1 GACTC-------TGTGGAAGAGGCCCTATCGGAGGCACGTGAACACCTCA 139 AY545919_SARS-badger_CFB/SZ/94 GACTC-------TGTGGAAGAGGCCCTATCGGAGGCACGTGAACACCTCA 139 AY304488_SARS-civet_SZ16_nsp1_ GACTC-------TGTGGAAGAGGCCCTATCGGAGGCACGTGAACACCTCA 139 NC_009694_SARS-bat_HKU3-1_nsp1 GACTC-------TGTGGAAGAGGCCTTATCGGAGGCACGTGAACATCTTA 139 NC_009019_Bat-CoV-HKU4_B04f GTTTGAAG---ATGGGGAAACTGCCTTCAACCAAGTGAGTT--CTATTCT 188 NC_009020_Bat-CoV-HKU5_LMH3f GTTTATGG---ACGGCGAAAGCGCCTATAAACATGTGAGTGAACAACTCT 190 NC_009021_Bat-CoV-HKU9_BF_005I TTTTGCTAATCCCAACGTCACTGGTTGGGATATTCCTATTGAGGAGGCTC 118 * EF424621_AntelopeCoV_US/OH1/20 CACGTCCATATGATTTGGAGGTGCTACTTCAAGATGCTTTGCAGTCCCGC 300 EF424622_GiCoV_US/OH3-TC/2006_ CACGTCCATATGATTTGGAGGTGCTACTTCAAGATGCTTTGCAGTCCCGC 300 NC_003045_BCoV_BCoV-ENT_nsp1_2 CACGTCCATATGATTTGGAGGTGCTACTTCAAGATGCTTTGCAGTCCCGC 300 NC_007732_PHEV_VW572_nsp1_211. CACGTCCATACGATTTGGAGGTGCTACTTCAAGATGCTTTGCAGTCCCGT 300 NC_005147_HCoV-OC43_OC43_nsp1_ CAAGTCCATATGATTTGGAGGTGCTACTTCAAGATGCTTTGCAGTCCCGT 300 AY884001_CoV-HKU1B_N2_nsp1_200 AAGATCTACATGTTGTAGAAGTTCTAACTAAAACAGCCGTAAAGTCCGGT 300 DQ339101_CoV-HKU1C_N5_nsp1_200 AAGATCTACATGTTGTAGAAGTTCTAACTAAAACAGCCGTAAAGTCCGGT 300 NC_006577_CoV-HKU1A_N1_nsp1_20 AAGATCTACATGTTGTAGAAGTTCTAACTAAAACAGCCGTAAAGTCCGGT 300 NC_001846_MHV_MHV-A59_nsp1_210 AGGATCCCCAGAAGGTGGAGGCCTCAACTATGATGGCATTGCAGTTCGGT 300 NC_005831_HCoV-NL63_AmsterdamI TTCCTTCTGTAGCCGTTCGCACCTATAGCGAAGCCGCTGCACAAGGTTTT 117 EF203064_Bat-CoV-HKU2_HKU2/GD/ CTATGTCTGATGCCGTTGAACATTTTAGTTCCTCCGCATCACACGGTTTT 117 NC_002645_HCoV-229E_inf-1_nsp1 CTATTGCGCAAGCCGTCCGCCGTTATAGCGAGGCCGCTAGCAATGGTTTT 117 NC_003436_PEDV_CV777_nsp1_297. CTGCTAGTGAAGCCGTCTCATACTATTCTGAGGCCGCCGCTAGTGGATTT 117 NC_009657_BtCoV-G1_BtCoV/512/2 CTGTTGAAGAGGCCGTATCATATTATAGTGATGCCGCTGTCAACGGATTT 117 NC_002306_TGEV_PUR46-MAD_nsp1_ TTCGTGACG-TGTTACAGGAAATTA-AGTACTGCTACCGT-AATGGATTT 114 DQ811787_PRCV_ISU-1_nsp1_304.. TTCGTGACG-TGTTACAGGAAATCA-AGTACTGTTACCGT-AATGGATTT 114 AY994055_FIPV_79-1146_nsp1_311 TCCGTGACG-CACTGCAGGAAATTA-AGTACTGCTACCGT-AACGGTTTT 114 NC_004718_SARS-human_Tor2_nsp1 AAAATGGCA----------CTTGTGGTCTAGTAGAGCT--GGAAAAAGGC 177 AY545919_SARS-badger_CFB/SZ/94 AAAATGGCA----------CTTGTGGTCTAGTAGAGCT--GGAAAAAGGC 177 AY304488_SARS-civet_SZ16_nsp1_ AAAATGGCA----------CTTGTGGTCTAGTAGAGCT--GGAAAAAGGC 177 NC_009694_SARS-bat_HKU3-1_nsp1 AAAATGGCA----------CTTGTGGCCTAGTAGAGCT--GGAAAAAGGT 177 NC_009019_Bat-CoV-HKU4_B04f TAAAGAAAAAGGTAAAATCCTTTTTGTCCCA-ATGCATATGCAGAGGGCT 237 NC_009020_Bat-CoV-HKU5_LMH3f CTAAGGGAA--GTAAGCTTCTCTTTGTCCCTCAAACAT-TGAAGGGATTC 237 NC_009021_Bat-CoV-HKU9_BF_005I TGGAATATGCGAAACAGCAGTTGCGCACTCCGGAACCTCAGTTGGTGTTT 168 EF424621_AntelopeCoV_US/OH1/20 GAAGCAGTTTTGGTTACACCCCCTCTAGGTATGTCTCTGGAGGCATGCTA 350 EF424622_GiCoV_US/OH3-TC/2006_ GAAGCAGTTTTGGTTACACCCCCTCTAGGTATGTCTCTGGAGGCATGCTA 350 NC_003045_BCoV_BCoV-ENT_nsp1_2 GAAGCAGTTTTGGTTACACCCCCTCTAGGTATGTCTCTGGAGGCATGCTA 350 NC_007732_PHEV_VW572_nsp1_211. GAAGCAGTTTTGGTTACACCCCCTCTAGGTATGTCTTTGGAGGCATGCTA 350 NC_005147_HCoV-OC43_OC43_nsp1_ GAAGCAGTTTTGGTTACAACCCCCTTAGGTATGTCTTTAGAGGCATGCTA 350 AY884001_CoV-HKU1B_N2_nsp1_200 ACGGCAATTTTAATTAAATCACCTTT--GCATAGCTT------------- 335 DQ339101_CoV-HKU1C_N5_nsp1_200 ACGGCAATTTTAATTAAATCACCTTT--GCATAGCTT------------- 335 NC_006577_CoV-HKU1A_N1_nsp1_20 ACGGCAATTTTAATTAAATCACCTTT--GCATAGCTT------------- 335 NC_001846_MHV_MHV-A59_nsp1_210 AGTGCCGTCTTGGTTAAGCCATCCAAGCGCTTGTCTATTCAGGCATGGAC 350 NC_005831_HCoV-NL63_AmsterdamI CAGGCATGCCGTTTTGTTGCTT---TTGGCTTACAGGATTGTGT------ 158 EF203064_Bat-CoV-HKU2_HKU2/GD/ AAGGATTGCCGTTTTGTAGCCT---CTGGGCTGCAGGACATCGT------ 158 NC_002645_HCoV-229E_inf-1_nsp1 AGGGCATGCCGATTTGTTTCAT---TAGATTTGCAGGATTGCAT------ 158 NC_003436_PEDV_CV777_nsp1_297. ATGCAATGCCGTTTTGTGTCCC---TCGATCTCGCTGACACTGT------ 158 NC_009657_BtCoV-G1_BtCoV/512/2 GACCAATGCCGTTTTGTGTCCT---TAGGTCTACAAGATGCCGT------ 158 NC_002306_TGEV_PUR46-MAD_nsp1_ GAGGGCTATGTTTTCGTACCAG---AATACTGTCGTGACCTAGT------ 155 DQ811787_PRCV_ISU-1_nsp1_304.. GAGGGCTATGTTTTCGTACCAG---AATACTGTCGTGACCTAGT------ 155 AY994055_FIPV_79-1146_nsp1_311 GATGGCTATGTCTTCGTGCCTG---AATACCGTCGTGACCTAGT------ 155 NC_004718_SARS-human_Tor2_nsp1 GTACTGCCCCAGCTTGAACAGC---CCTATGTGTTCATTAAACG------ 218 AY545919_SARS-badger_CFB/SZ/94 GTACTGCCCCAGCTTGAACAGC---CCTATGTGTTCATTAAACG------ 218 AY304488_SARS-civet_SZ16_nsp1_ GTACTGCCCCAGCTTGAACAGC---CCTATGTGTTCATTAAACG------ 218 NC_009694_SARS-bat_HKU3-1_nsp1 GTGTTGCCCCAGCTTGAACAGC---CCTATGTGTTCATTAAACG------ 218 NC_009019_Bat-CoV-HKU4_B04f ATGAAGTTTCTCCCAGGCCCACGTGTTTACCTGGTAGAGAGACT------ 281 NC_009020_Bat-CoV-HKU5_LMH3f ATACGGCATCTCCCAGGCCCTCGTGTTTACCTGGTTGAGAGGCT------ 281 NC_009021_Bat-CoV-HKU9_BF_005I GTGCCTTATTATTTGAGCCATGCACCTGGTATTAGTGGTGACCG------ 212 EF424621_AntelopeCoV_US/OH1/20 TGTGAGAGGTTGTAATCCTAATGGATGGACCATGGGTTTGTTTCGGCGTA 400 EF424622_GiCoV_US/OH3-TC/2006_ TGTGAGAGGTTGTAATCCTAATGGATGGACCATGGGTTTGTTTCGGCGTA 400 NC_003045_BCoV_BCoV-ENT_nsp1_2 TGTGAGAGGTTGTAATCCTAATGGATGGACCATGGGTTTGTTTCGGCGTA 400 NC_007732_PHEV_VW572_nsp1_211. TGTGAGAGGTTGTAATCCTAACGGATGGACCATGGGTTTGTTTCGGCGTA 400 NC_005147_HCoV-OC43_OC43_nsp1_ TGTGAGAGGTTGTAATCCTAAAGGATGGACCATGGGTTTGTTTCGGCGTA 400 AY884001_CoV-HKU1B_N2_nsp1_200 ------GGGTGGTTTTCCTAAAGGGTATGTTATGGGCTTGTTCC------ 373 DQ339101_CoV-HKU1C_N5_nsp1_200 ------GGGTGGTTTTCCTAAAGGGTATGTTATGGGCTTGTTCC------ 373 NC_006577_CoV-HKU1A_N1_nsp1_20 ------GGGTGGTTTTCCTAAAGGGTATGTTATGGGCTTGTTCC------ 373 NC_001846_MHV_MHV-A59_nsp1_210 TAATTTGGGTGTGCTTCCCAAAACAGCTGCCATGGGGTTGTTCAAGCGCG 400 NC_005831_HCoV-NL63_AmsterdamI AACCGG---TATTAATGATGATGATTATGTCATTGCATTGACT------- 198 EF203064_Bat-CoV-HKU2_HKU2/GD/ TATTGG---AGTTGAACCCAGTGACTTTGTCGTGGCTTTGGAG------- 198 NC_002645_HCoV-229E_inf-1_nsp1 CGTTGG---CATTGCAGACGATACATATGTTATGGGTCTGCAT------- 198 NC_003436_PEDV_CV777_nsp1_297. TGAGGG---ATTGCTTCCTGAAGACTATGTCATGGTGGTGATC------- 198 NC_009657_BtCoV-G1_BtCoV/512/2 GGTTGG---TGTTGAAGACGACGATGTCGTCATGCTAATCACT------- 198 NC_002306_TGEV_PUR46-MAD_nsp1_ TGATTG---CGATCGTAAGGATCACTACGTCATTGGTGTTCTT------- 195 DQ811787_PRCV_ISU-1_nsp1_304.. TGATTG---CGATCGTAAGGATCACTACGTCATTGGTGTTCTT------- 195 AY994055_FIPV_79-1146_nsp1_311 TGATTG---CAATCGTAAGGATCACTACGTCATTGGTGTTTTG------- 195 NC_004718_SARS-human_Tor2_nsp1 TTCTG-----ATGCCTTAAGCACCAATCACGGCCA-CAAGGTC------- 255 AY545919_SARS-badger_CFB/SZ/94 TTCTG-----ATGCCTTAAGCACCAATCACGGCCA-CAAGGTC------- 255 AY304488_SARS-civet_SZ16_nsp1_ TTCTG-----ATGCCTTAAGCACCAATCACGGCCA-CAAGGTC------- 255 NC_009694_SARS-bat_HKU3-1_nsp1 ATCTG-----ATGCTCTAAGCACCAATCACGGCCA-CAAGGTT------- 255 NC_009019_Bat-CoV-HKU4_B04f TACTGGAGGTATGCTTTCAAAGCATTTCCTTGTTAACCAATTG------- 324 NC_009020_Bat-CoV-HKU5_LMH3f GACAGGGGGTACCTATTCGGACCCATTCATGGTTAACCAGCTT------- 324 NC_009021_Bat-CoV-HKU9_BF_005I CGTTGTCATAACTGATAGCATTTGGTACGCTACTAATTTTGGATGGCA-G 261 EF424621_AntelopeCoV_US/OH1/20 GAAGTGTGTGTAACACTGGTCGCTGCGCTGTTAACAAGCATGTGGCCTAT 450 EF424622_GiCoV_US/OH3-TC/2006_ GAAGTGTGTGTAACACTGGTCGCTGCGCTGTTAACAAGCATGTGGCCTAT 450 NC_003045_BCoV_BCoV-ENT_nsp1_2 GAAGTGTGTGTAACACTGGTCGCTGCGCTGTTAACAAGCATGTGGCCTAT 450 NC_007732_PHEV_VW572_nsp1_211. GAAGTGTGTGTAACACTGGTCGCTGCGCTGTTAACAAGCATGTGGCCTAT 450 NC_005147_HCoV-OC43_OC43_nsp1_ GAAGTGTGTGTAACACTGGTCGTTGCACTGTTAATAAGCATGTGGCCTAT 450 AY884001_CoV-HKU1B_N2_nsp1_200 ---GTTCATACAAGACTAAACGTT---------------ATGTTGTACAT 405 DQ339101_CoV-HKU1C_N5_nsp1_200 ---GTTCATACAAGACTAAACGTT---------------ATGTTGTACAT 405 NC_006577_CoV-HKU1A_N1_nsp1_20 ---GTTCATACAAGACTAAACGTT---------------ATGTTGTACAT 405 NC_001846_MHV_MHV-A59_nsp1_210 TCTGCCTGTGTAACACCAGGGAGTGCTCTTGTGACGCCCACGTGGCCTTT 450 NC_005831_HCoV-NL63_AmsterdamI ---GGTACTAATCAGCTCTGTGCCAAAATTTTACCTTTTTCTGATAGACC 245 EF203064_Bat-CoV-HKU2_HKU2/GD/ ---GGTGATGAAATTCTCACTGCCTATATAGCCACTTTTGGAGCTAGACC 245 NC_002645_HCoV-229E_inf-1_nsp1 ---GGCAATCAGACGTTGTTTTGCAACATAATGAAATTTTCTGACCGTCC 245 NC_003436_PEDV_CV777_nsp1_297. ---GGCACTACCAAGCTTAGTGCGTATGTGGACACTTTTGGTAGCCGCCC 245 NC_009657_BtCoV-G1_BtCoV/512/2 ---GGTGTCACCCAATTGAGGGCTTATTTGGGCACTTTTGGTGACCGACC 245 NC_002306_TGEV_PUR46-MAD_nsp1_ ---GGTAACGGAGTAAGTGATCTTAAACCTGTTCTTCTTACCGAACCCTC 242 DQ811787_PRCV_ISU-1_nsp1_304.. ---GGTAACGGAGTAAGTAATCTTAAACCTGTTCTTCTTACCGAACCCTC 242 AY994055_FIPV_79-1146_nsp1_311 ---GGTAACGGAATAAGTGATCTTAAACCTGTTCTCCTTACCGAACCTTC 242 NC_004718_SARS-human_Tor2_nsp1 ---GTTGAGCTGGTTGCAGAAATGGACGGCAT--TCAGTACGGTCGTA-G 299 AY545919_SARS-badger_CFB/SZ/94 ---GTTGAGCTGGTTGCAGAAATGGACGGCAT--TCAGTACGGTCGTA-G 299 AY304488_SARS-civet_SZ16_nsp1_ ---GTTGAGCTGGTTGCAGAAATGGACGGCAT--TCAGTACGGTCGTA-G 299 NC_009694_SARS-bat_HKU3-1_nsp1 ---GTGGAATTGGTTGCAGAATTAGATGGCAT--TCAGTTCGGTCGTA-G 299 NC_009019_Bat-CoV-HKU4_B04f ---GCTTACAAAGATCAAGTTGGTGCCGCAATGATGCGCACCACATTGAA 371 NC_009020_Bat-CoV-HKU5_LMH3f ---GCTTACCAAAATGCCGCAGGAGAAGGTGTCATTGGCACAACCCTGCA 371 NC_009021_Bat-CoV-HKU9_BF_005I CCCATTAGGGAGCTTGCCATGGATAAGGATGGTGTTCGTTATGGTAGGGG 311 EF424621_AntelopeCoV_US/OH1/20 CAGCTATATATGATTGATCCTGCGGGTGTCTGTTTTGGTGCAGGTCAATT 500 EF424622_GiCoV_US/OH3-TC/2006_ CAGCTATATATGATTGATCCTGCGGGTGTCTGTTTTGGTGCAGGTCAATT 500 NC_003045_BCoV_BCoV-ENT_nsp1_2 CAGCTATATATGATTGACCCTGCGGGTGTCTGTTTTGGTGCAGGTCAATT 500 NC_007732_PHEV_VW572_nsp1_211. CAGCTATATATGATTGATCCTGCTGGTGTTTGTTTCGGTGCAGGTCAATT 500 NC_005147_HCoV-OC43_OC43_nsp1_ CAGTTATATATGATTGATCCTGCAGGTGTCTGTCTTGGTGCAGGTCAATT 500 AY884001_CoV-HKU1B_N2_nsp1_200 CATCTTTCTATGACTACATCTAC---TACTAATTTTGGTGAAGAT---TT 449 DQ339101_CoV-HKU1C_N5_nsp1_200 CATCTTTCTATGACTACATCTAC---TACTAATTTTGGTGAAGAT---TT 449 NC_006577_CoV-HKU1A_N1_nsp1_20 CATCTTTCTATGACTACATCTAC---TACTAATTTTGGTGAAGAT---TT 449 NC_001846_MHV_MHV-A59_nsp1_210 CACCTTTTTACGGTCCAACCCGATGGTGTATGCCTGGGTAATGGCCGTTT 500 NC_005831_HCoV-NL63_AmsterdamI CCTTAATTTGCGAGGTTGGCTCATTTTTTCTAACAGCAATTATGTT-CTT 294 EF203064_Bat-CoV-HKU2_HKU2/GD/ TCGTTGTTTGCGCGGCTGGCTTATACCTTCTAATTCTAATTATGTT-TTG 294 NC_002645_HCoV-229E_inf-1_nsp1 TTTTATGCTTCATGGGTGGTTGGTTTTTTCCAATTCAAATTACCTT-TTG 294 NC_003436_PEDV_CV777_nsp1_297. CAGAAACATTTGTGGTTGGCTGTTATTTTCTAACTGTAATTACTTC-CTC 294 NC_009657_BtCoV-G1_BtCoV/512/2 TCTGAATCTTCGAGGTTGGTTACTTTTCTCAAATTGCAACTACTTC-TTA 294 NC_002306_TGEV_PUR46-MAD_nsp1_ CGTCATGTTGCAAGGCTTTATTGTTAGAGCTAACTGCAATGGCGTT-CTT 291 DQ811787_PRCV_ISU-1_nsp1_304.. CGTCATGTTGCAAGGCTTTATTGTTAGATCTAACTGCAATGGCGTT-CTC 291 AY994055_FIPV_79-1146_nsp1_311 CGTCATGTTGCAGGGTTTCATTGTTAGAGCCAACTGCAATGGCGTT-CTT 291 NC_004718_SARS-human_Tor2_nsp1 CGGTATAACACTGGGAGTACTCGTGCCACATGTGGGCGAAACCCCA-ATT 348 AY545919_SARS-badger_CFB/SZ/94 CGGTATAACACTGGGAGTACTCGTGCCACATGTGGGCGAAACCCCA-ATT 348 AY304488_SARS-civet_SZ16_nsp1_ CGGTATAACACTGGGAGTACTCGTGCCACATGTGGGCGAAACCCCA-ATT 348 NC_009694_SARS-bat_HKU3-1_nsp1 CGGTATAACACTGGGAGTTCTCGTGCCACATGTGGGCGAAACCCCA-ATC 348 NC_009019_Bat-CoV-HKU4_B04f TGCTAAGCCTCTCGGTATGTTCTTTCCATATGATTCAAGTTTGGAG-ACT 420 NC_009020_Bat-CoV-HKU5_LMH3f GGGTAAGCGTGTTGGAATGTTCTTCCCATTTGATGCGGATCTTGTT-ACT 420 NC_009021_Bat-CoV-HKU9_BF_005I AGGAACACATGGTGTTTTGCTTCCCATGCAGGACCCGTCCTTTATT-ATG 360 EF424621_AntelopeCoV_US/OH1/20 TGTGGGTTGGGTTATACCCTTAGCCTTTATGCCTGTGCAATCCCGGAAAT 550 EF424622_GiCoV_US/OH3-TC/2006_ TGTGGGTTGGGTTATACCCTTAGCCTTTATGCCTGTGCAATCCCGGAAAT 550 NC_003045_BCoV_BCoV-ENT_nsp1_2 TGTGGGTTGGGTTATACCCTTAGCCTTTATGCCTGTGCAATCCCGGAAAT 550 NC_007732_PHEV_VW572_nsp1_211. CGTGGGTTGGGTTATACCCTTAGCCTTTATGCCTGCGCAATCCCGGAAAT 550 NC_005147_HCoV-OC43_OC43_nsp1_ CGTGGGTTGGGTCATACCCTTAGCCTTTATGCCTGTGCAATCCCGGAAAT 550 AY884001_CoV-HKU1B_N2_nsp1_200 TTTGGGTTGGATTGTACCTTTTGGTTTTATGCCATCTTATGTTCACAAAT 499 DQ339101_CoV-HKU1C_N5_nsp1_200 TTTTGGTTGGATTGTACCTTTTGGTTTTATGCCATCTTATGTTCACAAAT 499 NC_006577_CoV-HKU1A_N1_nsp1_20 TTTGGGTTGGATTGTACCTTTTGGTTTTATGCCATCTTATGTTCACAAAT 499 NC_001846_MHV_MHV-A59_nsp1_210 TATAGGCTGGTTCGTTCCAGTCACAGCCATACCGGAGTATGCGAAGCAGT 550 NC_005831_HCoV-NL63_AmsterdamI CAGGACTTTGATGTTGTTTTTGGCCATGGTGCAGGA-------------- 330 EF203064_Bat-CoV-HKU2_HKU2/GD/ GAGGAATTTCATGTAATTTTTGGCAAGCGCGGCGGT-------------- 330 NC_002645_HCoV-229E_inf-1_nsp1 GAGGAATTTGATGTTGTCTTCGGTAAGAGAGGTGGTGGT----------- 333 NC_003436_PEDV_CV777_nsp1_297. GAAGAGTTAGAGCTCACTTTTGGTCGTCGTGGTGGT-------------- 330 NC_009657_BtCoV-G1_BtCoV/512/2 GAAGAGTTGGATTTGGTTTTTGGCAGGTGTGGTGGT-------------- 330 NC_002306_TGEV_PUR46-MAD_nsp1_ GAGGACTTTGACCTTAAAATTGCTCGCACTGGC----------------- 324 DQ811787_PRCV_ISU-1_nsp1_304.. GAGGACTTTGACTTTAAAATTGCTCGTACTGGC----------------- 324 AY994055_FIPV_79-1146_nsp1_311 GAGGACTTTGACCTTAAATTCGCCCGTACTGGAAACGGC----------- 330 NC_004718_SARS-human_Tor2_nsp1 GCATACCGCAATGTTCTTCTTCGTAAGAACGGTAATAAGGGAGCCGGTGG 398 AY545919_SARS-badger_CFB/SZ/94 GCATACCGCAATGTTCTTCTTCGTAAGAACGGTAATAAGGGAGCCGGTGG 398 AY304488_SARS-civet_SZ16_nsp1_ GCATACCGCAATGTTCTTCTTCGTAAGAACGGTAATAAGGGAGCCGGTGG 398 NC_009694_SARS-bat_HKU3-1_nsp1 GCATACCGTAATGTTCTTCTCCGTAAGAATGGTAATAAGGGAGCCGGTGG 398 NC_009019_Bat-CoV-HKU4_B04f GGTGAATACACTTTTCTCCTACGTAAGAATGGTCTTGGAGGACAACTTTT 470 NC_009020_Bat-CoV-HKU5_LMH3f GGAGAGTTTCAATTTCTGCTTCGTAAGAAGGGCTTCGGTGGCAACCGCTT 470 NC_009021_Bat-CoV-HKU9_BF_005I GGTGATATTGATATCCAAATCCGTAAGTACGGTATTGGGGCCAACTCACC 410 EF424621_AntelopeCoV_US/OH1/20 --TTATTGTTCCTTGGGTTATGTACTTGCGTAAGTGTGGCGA-AAAGGGT 597 EF424622_GiCoV_US/OH3-TC/2006_ --TTATTGTTCCTTGGGTTATGTACTTGCGTAAGTGTGGCGA-AAAGGGT 597 NC_003045_BCoV_BCoV-ENT_nsp1_2 --TTATTGTTCCTTGGGTTATGTACTTGCGTAAGTGTGGCGA-AAAGGGT 597 NC_007732_PHEV_VW572_nsp1_211. --TTATTGTTCCTTGGGTCATGTACTTGCGTAAGTGTGGCGA-TAAGGGT 597 NC_005147_HCoV-OC43_OC43_nsp1_ --TTATTGTTCCATGGGTTATGTACTTGCGTAAGCGTGGCGA-AAAGGGT 597 AY884001_CoV-HKU1B_N2_nsp1_200 GGTTTCAATTCTGTAGGTTGTATATT--------------GA-AGAGAGT 534 DQ339101_CoV-HKU1C_N5_nsp1_200 GGTTTCAATTCTGTAGGTTGTATATT--------------GA-AGAGAGT 534 NC_006577_CoV-HKU1A_N1_nsp1_20 GGTTTCAATTCTGTAGGTTGTATATT--------------GA-AGAGAGT 534 NC_001846_MHV_MHV-A59_nsp1_210 GGTTGCAACCC--TGGTCCATCCTTCTTCGTAAGGGTGGTAACAAAGGGT 598 NC_005831_HCoV-NL63_AmsterdamI -------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ -------------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 -------------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. -------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 -------------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ -------------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. -------------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 -------------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 TCATAG----CTATGGCATCG--ATCTAAAGTCTTAT---GACTTAGGTG 439 AY545919_SARS-badger_CFB/SZ/94 TCATAG----CTATGGCATCG--ATCTAAAGTCTTAT---GACTTAGGTG 439 AY304488_SARS-civet_SZ16_nsp1_ TCATAG----CTATGGCACCG--ATCTAAAGTCTTAT---GACTTAGGTG 439 NC_009694_SARS-bat_HKU3-1_nsp1 TCATAG----TTTTGGCATCG--ATCTAAAGTCTTAT---GACTTAGGTG 439 NC_009019_Bat-CoV-HKU4_B04f CCGTGAACGACCATGGGATCGTAAGGAAACACCTTACGTGGAAATTTTAG 520 NC_009020_Bat-CoV-HKU5_LMH3f CCGTGATGCTCCTTGGGATTACAACTGGACTCCCTACTCTGATCTTATGG 520 NC_009021_Bat-CoV-HKU9_BF_005I GCCTGATGTATTACCGCTCTGGGATGGGTTTTCAGACCCAGGTCCGGATG 460 EF424621_AntelopeCoV_US/OH1/20 GCCTACAA--CAAAGATCATAAACGTGGCGGTTTTGAACACGTTTATAAT 645 EF424622_GiCoV_US/OH3-TC/2006_ GCCTACAA--CAAAGATCATAAACGTGGCGGTTTTGAACACGTTTATAAT 645 NC_003045_BCoV_BCoV-ENT_nsp1_2 GCCTACAA--CAAAGATCATAAACGTGGCGGTTTTGAACACGTTTATAAT 645 NC_007732_PHEV_VW572_nsp1_211. GCCTATAA--TAAAGATCATAAACGTGGCGGTTTTGAACACGTTTATAAT 645 NC_005147_HCoV-OC43_OC43_nsp1_ GCTTACAA--TAAAGATCATGGACGTGGCGGTTTTGGACATGTTTATGAT 645 AY884001_CoV-HKU1B_N2_nsp1_200 GATT------TAATAATTTCAAATTT--TAAATTTG---ATGATTATGAT 573 DQ339101_CoV-HKU1C_N5_nsp1_200 GATT------TAATAATTTCAAATTT--TAAATTTG---ATGATTATGAT 573 NC_006577_CoV-HKU1A_N1_nsp1_20 GATT------TAATAATTTCAAATTT--TAAATTTG---ATGATTATGAT 573 NC_001846_MHV_MHV-A59_nsp1_210 CTGTGACATCCGGCCACTTCCGCCGCGCTGTTACCATGCCTGTGTATGAC 648 NC_005831_HCoV-NL63_AmsterdamI -------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ -------------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 -------------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. -------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 -------------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ -------------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. -------------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 -------------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 ACGAGCTTGGCACTGATCCCATTGAAGATTATGAACAAAACTGGAACACT 489 AY545919_SARS-badger_CFB/SZ/94 ACGAGCTTGGCACTGATCCCATTGAAGATTATGAACAAAACTGGAACACT 489 AY304488_SARS-civet_SZ16_nsp1_ ACGAGCTTGGCACTGATCCCATTGAAGATTATGAACAAAACTGGAACACT 489 NC_009694_SARS-bat_HKU3-1_nsp1 ACGAACTTGGCACTGATCCCATTGAAGATTATGAACAAAACTGGAACACT 489 NC_009019_Bat-CoV-HKU4_B04f ATGATCTTGAGGCTGACCCTACTGGTAAGTACTCACAGAATCTTCTTAAG 570 NC_009020_Bat-CoV-HKU5_LMH3f ACGCTCTTGAGGCTGACCCTTGTGGTAAGTACTCTCAGAGCCTTCTTAAG 570 NC_009021_Bat-CoV-HKU9_BF_005I TGGGGCCTTATTTAGATTTCCCTGATAATTGCTGCCCTACAAAGCCTAAA 510 EF424621_AntelopeCoV_US/OH1/20 TTTAAAGTTGAGGATGCTTACGACTTGGTTCATGATGAGCCTAAGGGTAA 695 EF424622_GiCoV_US/OH3-TC/2006_ TTTAAAGTTGAGGATGCTTACGACTTGGTTCATGATGAGCCTAAGGGTAA 695 NC_003045_BCoV_BCoV-ENT_nsp1_2 TTTAAAGTTGAGGATGCTTACGACTTGGTTCATGATGAGCCTAAGGGTAA 695 NC_007732_PHEV_VW572_nsp1_211. TTTAAAGTTGAGGATGCTTACGACCAGGTTCATGATGAGCCTAAGGGTAA 695 NC_005147_HCoV-OC43_OC43_nsp1_ TTTAAAGTTGAAGATGCTTATGACCAGGTGCATGATGAGCCTAAGGGTAA 695 AY884001_CoV-HKU1B_N2_nsp1_200 TTTAGTGTAGAAGATGCTTATGCTGAGGTTCATGCTGAGCCTAAAGGTAA 623 DQ339101_CoV-HKU1C_N5_nsp1_200 TTTAGTGTAGAAGCTGCTTATGCTGAGGTTCATGCTGAGCCTAAAGGTAA 623 NC_006577_CoV-HKU1A_N1_nsp1_20 TTTAGTGTAGAAGATGCTTATGCTGAGGTTCATGCTGAGCCTAAAGGTAA 623 NC_001846_MHV_MHV-A59_nsp1_210 TTTAATGTAGAGGATGCTTGTGAGGAGGTTCATCTTAACCCGAAGGGTAA 698 NC_005831_HCoV-NL63_AmsterdamI -------------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ -------------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 -------------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. -------------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 -------------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ -------------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. -------------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 -------------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 AAGCATGGCAGTGGTGCACTCCGTGAACTCACTCGTGAGCTCAATGGAGG 539 AY545919_SARS-badger_CFB/SZ/94 AAGCATGGCAGTGGTGCACTCCGTGAACTCACTCGTGAGCTCAATGGAGG 539 AY304488_SARS-civet_SZ16_nsp1_ AAGCATGGCAGTGGTGCACTCCGTGAACTCACTCGTGAGCTCAATGGAGG 539 NC_009694_SARS-bat_HKU3-1_nsp1 AAGCATGGCAGTGGTGCTCTCCGTGAACTCACTCGTGAGCTCAATGGAGG 539 NC_009019_Bat-CoV-HKU4_B04f AAGTTGATTGGTGGT----------------------------------- 585 NC_009020_Bat-CoV-HKU5_LMH3f AAGCTCGTTGGAGGT----------------------------------- 585 NC_009021_Bat-CoV-HKU9_BF_005I GCGAAGAGGGGCGGC----------------------------------- 525 EF424621_AntelopeCoV_US/OH1/20 GTTTTCTAAGAAGGCTTATGCTTTAATTAGAGGATACCGTGGT 738 EF424622_GiCoV_US/OH3-TC/2006_ GTTTTCTAAGAAGGCTTATGCTTTAATTAGAGGATACCGTGGT 738 NC_003045_BCoV_BCoV-ENT_nsp1_2 GTTTTCTAAGAAGGCTTATGCTTTAATTAGAGGATACCGTGGT 738 NC_007732_PHEV_VW572_nsp1_211. GTTTTCTAGGAAGGCTTATGCTTTACTTAGAGGATACCGTGGT 738 NC_005147_HCoV-OC43_OC43_nsp1_ GTTTTCTAAGAAGGCTTATGCTTTAATTAGAGGGTATCGTGGT 738 AY884001_CoV-HKU1B_N2_nsp1_200 ATATTCACAAAAAGCTTATGCTTTACTTAGACAATATCGTGGT 666 DQ339101_CoV-HKU1C_N5_nsp1_200 ATATTCACAAAAAGCTTATGCTTTACTTAGACAATATCGTGGT 666 NC_006577_CoV-HKU1A_N1_nsp1_20 ATATTCACAAAAAGCTTATGCTTTACTTAGACAATATCGTGGT 666 NC_001846_MHV_MHV-A59_nsp1_210 GTACTCCTGCAAGGCGTATGCTCTTCTTAAGGGCTATCGCGGT 741 NC_005831_HCoV-NL63_AmsterdamI ------------------------------------------- EF203064_Bat-CoV-HKU2_HKU2/GD/ ------------------------------------------- NC_002645_HCoV-229E_inf-1_nsp1 ------------------------------------------- NC_003436_PEDV_CV777_nsp1_297. ------------------------------------------- NC_009657_BtCoV-G1_BtCoV/512/2 ------------------------------------------- NC_002306_TGEV_PUR46-MAD_nsp1_ ------------------------------------------- DQ811787_PRCV_ISU-1_nsp1_304.. ------------------------------------------- AY994055_FIPV_79-1146_nsp1_311 ------------------------------------------- NC_004718_SARS-human_Tor2_nsp1 T------------------------------------------ 540 AY545919_SARS-badger_CFB/SZ/94 T------------------------------------------ 540 AY304488_SARS-civet_SZ16_nsp1_ T------------------------------------------ 540 NC_009694_SARS-bat_HKU3-1_nsp1 T------------------------------------------ 540 NC_009019_Bat-CoV-HKU4_B04f ------------------------------------------- NC_009020_Bat-CoV-HKU5_LMH3f ------------------------------------------- NC_009021_Bat-CoV-HKU9_BF_005I -------------------------------------------